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Training HMM structure with genetic algorithm for biological sequence analysis -...
http://bioinformatics.oupjournals.org/cgi/content/abstract/20/18/3613
Abstract : Using Hidden Markov Models in the Analysis of Biological Sequences...
http://www.apim.ens.fr/workshop_text_99/prum_abstract.html
Learning Hidden Markov Model Topology...
http://www.bioinfo.de/isb/gcb99/poster/schliep/
Bioinformatics II; Hidden Markov Models...
http://www.inf.ethz.ch/personal/schlude/bioinfII/
Parametric inference for biological sequence analysis -- Pachter and Sturmfels 1...
http://www.pnas.org/cgi/content/abstract/101/46/16138
Lecture notes: 5. Hidden Markov models...
http://www.sbc.su.se/~per/mdh-bioinfo-2001/hmm/hmm.html
Sequence analysis and probability theory ...
http://bio.lundberg.gu.se/courses/ht03/bio1/SeqAnalProb.pdf
Training HMM structure with genetic algorithm for biological sequence analysis -...
http://bioinformatics.oupjournals.org/cgi/content/short/bth454v1
Score Following Using ...
http://freesoftware.ircam.fr/misc/papers/str-icmc-01-suivi.pdf
17th International Conference on Pattern Recognition (ICPR'04), Cambridge, Unite...
http://www.informedia.cs.cmu.edu/documents/icpr04_gao_final.pdf
Hidden Markov Models, autumn 2004...
http://www.math.chalmers.se/Stat/Grundutb/Chalmers/TMS091/
Lecture notes: 5. Hidden Markov models...
http://www.sbc.su.se/~per/molbioinfo2001/hmm-hmm.html
ECS EPrints Service - Training HMM Structure with Genetic Algorithm for Biologic...
http://eprints.ecs.soton.ac.uk/9393/
HUSAR News...
http://genome.dkfz-heidelberg.de/menu/biounit/show_news.shtml
Assignment 4: Hidden Markov Models: Protein ...
http://sifaka.cs.uiuc.edu/course/397cxz04s/assign4.pdf
Protein Structure Analysis Using Continuous Density HMMs 1 ...
http://sunflower.kuicr.kyoto-u.ac.jp/~morihiro/public/giw2002.pdf
Hidden Markov Model Analysis of Motifs in Steroid Dehydrogenases and their Homol...
http://www.cs.columbia.edu/~bgrundy/papers/dehydrog.html
55:148,55:247 Chapter 8, Part 7...
http://www.icaen.uiowa.edu/~dip/LECTURE/Understanding7.html
(99) DNA Sequence Analysis using Hidden Markov Model and Genetic Algorithm...
http://www.icot.or.jp/ARCHIVE/Museum/IFS/abst/099.html
340 Genome Informatics 13: 340341 (2002) ...
http://www.jsbi.org/journal/GIW02/GIW02P131.pdf
Löytynoja, Ari;Milinkovitch, Michel - A hidden Markov model for progressive mul...
http://domino.mpi-sb.mpg.de/internet/eccb2002.nsf/0/a1196c0e75534ecdc1256c1
Graphical Programming Interface for an XML-based Hidden Markov ...
http://web.comlab.ox.ac.uk/oucl/courses/grad04-05/cs/proj86.pdf
...
http://www-lbit.iro.umontreal.ca/ISMB98/tutorials/hmm-tut.html
Something about Computer Science ...
http://www.daimi.au.dk/~engberg/DAIMI/PhD/DissTempl/DissTempl.pdf
Hidden Markov Models...
http://www.bioalgorithms.info/problems/06_asmt.htm
Prof. Sonnhammer's Home Page...
http://www.cgr.ki.se/cgb/groups/sonnhammer/
Programs for biosequence analysis...
http://www.dina.dk/~sestoft/bsa.html
Programs for biosequence analysis...
http://www.dina.kvl.dk/~sestoft/bsa.html
Markov Chain and Hidden Markov Model References...
http://www.marypat.org/stuff/random/markov.html
Hidden Markov models in biological sequence analysis...
http://domino.research.ibm.com/tchjr/journalindex.nsf/0/7b8a1a643b7d9fde852
HIDDEN MARKOV MODELS AND SEQUENCE ALIGNMENT ...
http://guava.physics.uiuc.edu/~nigel/courses/498BIO/498BIOonline-essays/hw3
bioperl modules for Pise Web servers...
http://www.pasteur.fr/recherche/unites/sis/Pise/ORA2002/s1.html
Chinese Lexical Analysis Using Hierarchical Hidden Markov Model ...
http://acl.ldc.upenn.edu/W/W03/W03-1709.pdf
Wistrand, Markus;Sonnhammer, Erik L.L - Choosing transition prior to maximize ac...
http://domino.mpi-sb.mpg.de/internet/eccb2002.nsf/0/8c43852961363516c1256c1
Wistrand, Markus;Sonnhammer, Erik L.L - Choosing transition prior to maximize ac...
http://domino.mpi-sb.mpg.de/internet/eccb2002.nsf/0/8c43852961363516c1256c1
Numerical Analysis / Scientific Computing...
http://page.mi.fu-berlin.de/~biocomp/Lehre/MarkovKetten_WS02/seminar/
FORMANT ANALYSIS AND SYNTHESIS USING ...
http://research.microsoft.com/srg/papers/1999-alexac-eurospeech.pdf
COS 597c: Topics in Computational Molecular Biology ...
http://www.cs.princeton.edu/~mona/Lecture/HMM1.pdf
CBSG...
http://www.stat.nus.edu.sg/bsa/bsa.html
The Sanger Institute: Tim Hubbard - Genome Analysis And Protein Structure Predic...
http://predict.sanger.ac.uk/mirrors/hmm/hmm.html
Curricular Materials...
http://students.haverford.edu/arosenbe/cm/cmmain.html
Protein Multiple Sequence Analysis...
http://www.cbi.pku.edu.cn/mirror/GenomeWeb/prot-mult.html
Comparing a Hidden Markov ...
http://www.cs.mu.oz.au/~shanec/presentations/476-presentation.pdf
D and Pseudo D Hidden Markov Models ...
http://cui.unige.ch/~marchand/publi/reports/RR-99-49A.pdf
Hidden Markov Models ...
http://guava.physics.uiuc.edu/~nigel/courses/498BIO/498BIOonline-essays/hw3
124 No. 63 Gough et al. ...
http://recomb2000.ims.u-tokyo.ac.jp/Posters/pdf/63.pdf
Biological Sequence Analysis : Probabilistic Models of Proteins and Nucleic Acid...
http://www.bookfinder.us/review2/0521629713.html
Bibliographie...
http://www.ensta.fr/~muguet/PPL02/francke/rapportppl/node25.html
DBLP: Richard Hughey...
http://www.informatik.uni-trier.de/~ley/db/indices/a-tree/h/Hughey:Richard.
Analysis of Biological Sequences...
http://astor.som.jhmi.edu/~sining/BSA/syllabus.htm
1. Introduction...
http://bioweb.pasteur.fr/docs/sam/node2.html
HMMER: sequence analysis using profile hidden Markov models...
http://hmmer.wustl.edu/
Books...
http://www.binf.ku.dk/users/krogh/books.html
Sequence analysis...
http://www.biochem.ucl.ac.uk/bsm/BCSB/bioinfo_resources/seq_analysis.htm
Motif-based ...
http://www1.cs.columbia.edu/~noble/papers/ismb-poster.pdf
MODULE CODE BIOM404 MODULE LEVEL M ...
http://bioinformatics.ex.ac.uk/pdf/BIOM404.pdf
Hidden Markov Models...
http://www.csse.monash.edu.au/~lloyd/tildeMML/Structured/HMM.html
SIGNAL DETECTION OF PROBABLE MUTATIONAL SITES IN DNA SEQUENCE REGION OF INHERITE...
http://www.med.miami.edu/mnbws/Oppon60.html
Profile hidden Markov models...
http://www.people.virginia.edu/~wrp/cshl98/hmm-lecture.html
Eddy lab :: Publications :: Biological Sequence Analysis...
http://www.genetics.wustl.edu/eddy/publications/cupbook.html
Comparative and Functional Genomics ...
http://www.intl-pag.org/11/CFG/gollery.pdf
SWBIC - Hidden Markov Models...
http://www.swbic.org/links/1.11.php
SAM: UCSC's Sequence Alignment and Modeling System...
http://www.cse.ucsc.edu/research/compbio/sam.html
AdvancedBioinformatics ...
http://www.biostat.wisc.edu/~craven/776/lecture1.pdf
DBLP: Anders Krogh...
http://www.informatik.uni-trier.de/~ley/db/indices/a-tree/k/Krogh:Anders.ht
Hidden Markov Models...
http://www.sfb363.uni-halle.de/kurs/hmm.html
Stochastic Models in Molecular Evolution and Genetics...
http://www.stat.rice.edu/~mathbio/stat684.html
Markov Models ...
http://www.cs.toronto.edu/~roweis/notes/scia03h.pdf
Hidden Markov models in biological sequence analysis - References...
http://www.research.ibm.com/journal/rd/453/brineref.html
MODULE CODE BIOM303 MODULE LEVEL M ...
http://bioinformatics.ex.ac.uk/pdf/BIOM303.pdf
BCB/COM S/GEN/MATH 594 Brendel Spring 2005 Schedule...
http://gremlin1.zool.iastate.edu/~volker/teaching/bcb594schedule.html
...
http://faculty.cs.tamu.edu/ioerger/HMMs.ppt
1930 Biophysical Journal Volume 82 April 2002 1930 1942 ...
http://info.med.yale.edu/cmphysiol/sigworth/publications/Venkat02.pdf
Tutorials -- ISMB...
http://www-smi.stanford.edu/projects/helix/ismb94/Tutorials.html
...
http://alumni.cse.ucsc.edu/~kimmen/cv.ascii.oct98
Also appears in the Online Symposium for Electronics Engineer 2000 ...
http://www.accenture.com/xdoc/en/services/technology/publications/hmmtutori
Applications of ...
http://www.bioconductor.org/workshops/ShortCourse012302/lectures/lect3.pdf
...
http://www.newton.cam.ac.uk/programmes/NNM/nnmdna.html
Sequence Analysis Information Page...
http://www.psc.edu/biomed.old/pages/SAI.html
To appear in The Handbook of Brain Theory and Neural Networks, Second edition, (...
http://www.idiap.ch/~bengio/cv/publications/pdf/handbook_2002.pdf
Genome Analysis. Sequence Analysis Server Page...
http://genome.imb-jena.de/seqanal.html
Introduction to Bioinformatics...
http://kbrin.a-bldg.louisville.edu/~rouchka/CECS694/Week8.html
IBM Journal of Research and Development: Hidden Markov models in biological sequ...
http://www.findarticles.com/p/articles/mi_qa3751/is_200105/ai_n8951672
JOURNAL OF COMPUTATIONAL BIOLOGY ...
http://www-2.cs.cmu.edu/~epxing/class/lior.pdf
by E. Birney ...
http://www.research.ibm.com/journal/rd/453/birney.pdf
Chapter 4 ...
http://www.binf.ku.dk/users/krogh/publications/ps/Krogh98a.pdf
Segmentation of Yeast DNA Using Hidden Markov Models...
http://people.csail.mit.edu/~pesha/Public/cabios/
Hidden Markov models from molecular dynamics ...
http://www.pnas.org/cgi/reprint/99/13/8642.pdf
Modèles statistiques (HMM...)...
http://www.inra.fr/bia/T/genome/node25.html
Course Programme 2005...
http://www.cbs.dtu.dk/phdcourse/programme.html
WWW protein SEQUENCE...
http://www.ysbl.york.ac.uk/ppc/sequence.html
Combining phylogenetic and hidden Markov models in biosequence analysis...
http://portal.acm.org/citation.cfm?id=640111&jmp=abstract&dl=GUIDE&dl=ACM&C
Combining Phylogenetic and Hidden Markov Models in ...
http://www-2.cs.cmu.edu/~epxing/class/adam.pdf
MEMORANDUM...
http://www.cse.ucsc.edu/research/compbio/ismb99.handouts/KK185FP.html
Hidden Markov Model Analysis of Motifs in Steroid ...
http://www.sdsc.edu/~tbailey/papers/dehydrog-bbrc97.ps
123 Genomics - Sequence analysis, data mining, gene hunting, genomic mining, pro...
http://www.123genomics.com/files/analysis.html
Ten years of HMMs...
http://www.tsi.enst.fr/~cappe/docs/hmmbib.html
ResearchLink: ResearchLink by LabVelocity : Tools...
http://researchlink.labvelocity.com/tools/index.jhtml
HMM-based neural spike analysis ...
http://www.cnel.ufl.edu/files/1031570296.pdf
Appendix 1: The Hidden Markov Model...
http://www.dlib.org/dlib/february02/birmingham/birmingham-appendix1.html
Score Following Using ...
http://www.ircam.fr/equipes/temps-reel/suivi/resources/orio.2001.icmc.pdf
Profile hidden Markov models...
http://www.math.chalmers.se/Stat/Bioinfo/Master/Courses/BioinformaticsII/HM
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