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  • SMB 2004 - Final Schedule...
    http://www.math.lsa.umich.edu/SMB2004/SMBscheduleFinal.php

  • Systems Biology @ UniS: Events...
    http://www.surrey.ac.uk/systemsbiology/events.htm

  • ...
    http://www.unitn.it/events/consci/download/presentation/Finney.ppt

  • BIOINFORMATICS AND BIOSYSTEMS...
    http://math.ucsd.edu/~williams/courses/bioinf.html

  • Multiscale Simulation of ...
    http://nbcr.sdsc.edu/mcmregistration/pdf/Linda_Petzold.pdf

  • ...
    http://www.wisdom.weizmann.ac.il/~aviv/prez_web/abstract_japan.doc

  • Upinder S Bhalla...
    http://www.ncbs.res.in/~faculty/upi.html

  • SysBio.PL Group...
    http://www.sysbio.pl/stocks/

  • Math Biology Seminar Abstracts...
    http://www.math.utah.edu/~keener/mathbio/abstracts/Thomas.html

  • SysBio.PL Group...
    http://www.sysbio.pl/projects/stoch.html

  • Maciek Dobrzynski ...
    http://www.siliconcell.net/sica/NWO-CLS/CellMath/04.11.24/Maciek.pdf

  • Phototaxis in Halobacterium Salinarum...
    http://www.isr.uni-stuttgart.de/~torsten/Projekt_www_11_2001.html

  • StochSim, a stochastic biochemical simulator...
    http://www.ebi.ac.uk/~lenov/stochsim.html

  • Modeling and Simulation of Biological Regulatory Processes...
    http://www.inra.fr/eccb2003/satellite2.html

  • Pawan Dhar ...
    http://web.bii.a-star.edu.sg/~ssomani/documents/sandeep_somani_pub_2.pdf

  • David McMillen...
    http://www.utm.utoronto.ca/~mcmillen/

  • FUNDAMENTAL CONCEPTS AND METHODS ...
    http://www.ccl.rutgers.edu/systems-course/modeling_lect00.pdf

  • CURRICULUM VITAE ...
    http://www.esat.kuleuven.ac.be/~decock/resume_KDC.pdf

  • Bayesian inference for stochastic kinetic genetic ...
    http://www.maths.leeds.ac.uk/Statistics/workshop/lasr2004/Proceedings/wilki

  • STOChastic Kinetic Simulator...
    http://www.sysbio.pl/stocks/stocks1.html

  • "E-Cells" as a basis for the bioinformatical modeling of genetic interactions...
    http://bfam.bio.wzw.tum.de/projects/genetic_interaction

  • Singh, Kapil;Prank, Klaus - Efficient Stochastic Simulation of Intracellular Sig...
    http://domino.mpi-sb.mpg.de/internet/eccb2002.nsf/0/0a524908ce7c1530c1256c1

  • New Page 1...
    http://www.gmm.gu.se/YSBN/models_page.htm

  • Catalytic Networks ...
    http://pages.cpsc.ucalgary.ca/~jacob/Courses/Winter2003/CPSC601-73/Slides/1

  • SB Class...
    http://www.bme.jhu.edu/labs/levchenko/SB-class.htm

  • AN APPLICATION OF SYSTEM THEORY TO STOCHASTIC MODELS FOR FIRST ...
    http://www.esat.kuleuven.ac.be/~decock/zhang.pdf

  • BIODRIVE: ...
    http://www.jsbi.org/journal/GIW99/GIW99P67.pdf

  • Helix bioinformatics...
    http://www-helix.inrialpes.fr/article335.html

  • GENESIS Tutorials...
    http://www.genesis-users-meeting.org/tutorial.htm

  • Topics and literature for the LMU seminar (summer term 2004): ...
    http://www.stat.uni-muenchen.de/~strimmer/teaching/ss04/complexmodels/refer

  • Modeling a Hox Gene Network ...
    http://www.icsb2001.org/Posters/062_kastner.pdf

  • ks-master titles...
    http://www.jaist.ac.jp/library/master_html/ks-2002_html/ks-master2002-TR-e-

  • AG Hütt - research...
    http://www.tu-darmstadt.de/fb/bio/bot/huett/research.htm

  • Causal -Calculus for Biochemical Modelling ...
    http://www.di.unipi.it/~curtim/docs/Reduction-Abstract.pdf

  • Stochastic Models of Complex Biological Systems...
    http://www.stat.uni-muenchen.de/~strimmer/teaching/ss04/complexmodels/

  • G Protein...
    http://quad.bic.caltech.edu/~kastner/Gprotein.html

  • Introduction to Systems Biology...
    http://www.mem.drexel.edu/belta/classes/systems_bio/systems_bio_spring_2004

  • Research...
    http://chaos.c.u-tokyo.ac.jp/~furusawa/research/research.html

  • Fast Stochastic Simulation of Metabolic Networks...
    http://www.bioinfo.de/isb/gcb01/poster/schwehm.html

  • Quantitative Biology Institute...
    http://www.biosci.ohiou.edu/qbi/projects_overview.html

  • A multi-agent system for the quantitative simulation of biological networks...
    http://portal.acm.org/citation.cfm?id=860637&jmp=indexterms&dl=portal&dl=AC

  • Extracting Biochemical Reaction Kinetics ...
    http://www.informatics.indiana.edu/schnell/papers/lnai3214_329.pdf

  • Naama Barkai Quantitative study and computer ...
    http://www.weizmann.ac.il/Biology/open-day/images/barka.pdf

  • ...
    http://www.cs.technion.ac.il/~cs236805/SimPresentation.ppt

  • Gene Network Inference...
    http://www.cs.unm.edu/~patrik/networks/networks.html

  • Summer School - Program...
    http://www.cnd.mcgill.ca/summerschool/program.htm

  • ...
    http://bioinformatics.cims.nyu.edu/BLISS/VenkatSlides.ppt

  • Modeling and Simulations ...
    http://www.bisb.uni-bayreuth.de/People/ullmann/Lectures-WS04/lecture-model-

  • Stochasticity in Transcriptional Regulation: Origins, Consequences, and Mathemat...
    http://www.biophysj.org/cgi/content/abstract/81/6/3116

  • Cellular Automata Approaches to Enzymatic ...
    http://www.jweimar.de/postscript/caenzym.pdf

  • ...
    http://www.snl.salk.edu/~pjthomas/research.html

  • JCB ...
    http://angel.elte.hu/~andras/pdf/select/vilar_03_jcb.pdf

  • Systems Engineering Challenges and ...
    http://www.cheme.cmu.edu/focapo/PDF/Maranas_FOCAPO%202003slides.pdf

  • Modelling and Analysis of Biochemical Networks ...
    http://www.informatik.hu-berlin.de/~popova/csp_1-2004.pdf

  • Biochemical networks ...
    http://www.me.ucsb.edu/~moehlis/APC591/bialek_notes1.pdf

  • Abstracts...
    http://www.uta.edu/math/faculty/shipman/FMCB/abstracts.html

  • Intrinsic noise in gene regulatory networks ...
    http://web.mit.edu/biophysics/papers/PNAS2001.pdf

  • Control analysis projects...
    http://bms-mudshark.brookes.ac.uk/projects.html

  • Main Projects...
    http://www.staff.ncl.ac.uk/daryl.shanley/VirtualCellOverview.htm

  • ...
    http://www.caam.rice.edu/~cox/c499.html

  • CSM: Applied Mathematics - Projects - Mathematical Biology...
    http://csm.pnl.gov/mathematics/biology.stm

  • Arkin Laboratory for Dynamical Genomics...
    http://gobi.lbl.gov/~aparkin/Stuff/Manuscripts.html

  • On Bayesian Inference for Stochastic Kinetic ...
    http://www.mas.ncl.ac.uk/~n9026132/paper2.pdf

  • Bayesian inference for stochastic kinetic genetic ...
    http://www.ncl.ac.uk/math/research/statistics/bioinformatics/networks.pdf

  • Mathematical Modeling of ...
    http://www-sop.inria.fr/comore/arcgdyn/28fev/arc03-intro.pdf

  • Berkeley Lab Research Review Summer 2000...
    http://www.lbl.gov/Science-Articles/Research-Review/Magazine/2000/Winter/fe

  • Proc. Natl. Acad. Sci. USA ...
    http://cmbi.bjmu.edu.cn/cmbidata/vcell/computer/petri-net.pdf

  • Sunday Poster Presentations: Complex Biological Networks...
    http://www.iscb.org/ismb2000/posters_abstracts/SundayCBN.html

  • ...
    http://www.unifr.ch/econophysics/PHP/formulaire/afficher_mois.php?month=sep

  • Genome Informatics 15(1): 125­137 (2004) 125 ...
    http://www.jsbi.org/journal/IBSB04/IBSB04F006.pdf

  • A Stochastic Analysis of First-Order Reaction Networks ...
    http://www.math.umn.edu/~chlee/papers/sto1.pdf

  • Proc. Natl. Acad. Sci. USA ...
    http://caulo.stanford.edu/usr/hm/pdf/1997_McAdams_Arkin_PNAS.pdf

  • BIOEN 485 Autumn 2004 Readings and Tutorials...
    http://courses.washington.edu/bioen485/notes.htm

  • MIT OpenCourseWare Brain and Cognitive Sciences 9.530 Cellular and Molecular...
    http://ocw.mit.edu/OcwWeb/Brain-and-Cognitive-Sciences/9-530Cellular-and-Mo

  • Review articles ...
    http://www.bioinformatics.iastate.edu/systemsbiology/davidson2.pdf

  • Modeling of biochemical networks ...
    http://www.math.pitt.edu/~swigon/MathBio/Handout.pdf

  • My first styled page...
    http://www.math.wm.edu/~sjs/MCB.html

  • Simulating Cellular Reaction Networks with ...
    http://www.molsci.org/~lok/moleculizer/moleculizer-doc/mzr_bio.pdf

  • Quantitative modeling of stochastic systems in molecular biology by using stocha...
    http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=22622

  • Thermodynamics of Stoichiometric Biochemical Networks in ...
    http://bbc.mcw.edu/Computation/publications/0302.pdf

  • Lecture schedule...
    http://hebb.mit.edu/courses/9.53/lecture_schedule.html

  • Specific Aims Principal Investigator/Program Director: (Last, first, middle): Ba...
    http://nsr.bioeng.washington.edu/Research/AandB.pdf

  • Chapter 6...
    http://cbcg.lbl.gov/ssi-csb/Chapter6.html

  • Biology of the Cell 96 (2004) 355­362 ...
    http://www.samsi.info/200405/compbio/workinggroup/cell/Eungdamrong_Iyengar_

  • Modeling and Simulation ...
    http://www.zbit.uni-tuebingen.de/biss2002/handouts/pdf/schwehm.pdf

  • Bioinformatics Course for PGDB2002...
    http://www.c3.lanl.gov/~rocha/bioinformatics/

  • Modelling of ...
    http://www.tbi.univie.ac.at/Leere/Slides/814236/ss03/raim.pdf

  • Stochastic Simulation of Biological Cellular Processes Using VHDL-AMS ...
    http://www.bmas-conf.org/2002/papers/bmas02-peterson.pdf

  • Chapter 6 ...
    http://cbcg.lbl.gov/ssi-csb/Download/Chapter6.pdf

  • JigCell Website Glossary...
    http://jigcell.biol.vt.edu/glossary.html

  • Mathematical Biosciences Institute...
    http://mbi.osu.edu/2004/ws2abstracts.html

  • Modeling network dynamics: the lac operon, a case study -- Vilar et al. 161 (3):...
    http://www.jcb.org/cgi/content/full/161/3/471

  • J. theor. Biol. (2002) 218, 309­321 ...
    http://www.thep.lu.se/~peter/jc/yin.pdf

  • Dynamical Stochastic Modeling in Biology: Abstracts...
    http://www.math.ku.dk/~michael/dynbio/abstracts.html

  • Network...
    http://www.schacherer.de/frank/tech/bib/network.html

  • Spring2002...
    http://www.stat.rice.edu/~mathbio/spring03.html

  • MIT Press Math6X9/2002/03/22:22:56 Page 1 ...
    http://web.sfc.keio.ac.jp/~tom/Shimizu01.pdf

  • BioNOME - Resources...
    http://bionome.sdsc.edu/html/signal_resources.html

  • Modeling a Hox Gene Network ...
    http://etd.caltech.edu/etd/available/etd-10042002-200303/unrestricted/Kastn

  • Genome ...
    http://gcrg.ucsd.edu/classes/2_4_modeling.pdf

  • Hybrid Modeling and Simulation of ...
    http://www.seas.upenn.edu/~pappasg/papers/HSCC01-BIO.pdf

  • (KINSOLVER) ...
    http://lsdis.cs.uga.edu/~aleman/kinsolver/paper25.pdf

  • Computation in Cells Workshop: Invited Speakers...
    http://strc.herts.ac.uk/bio/emergent/workshop_abstracts.html

  • Modeling biological systems using Dynetica ­ a simulator of ...
    http://www.duke.edu/~you/publications/Dynetica.pdf

  • ARTICLE IN PRESS ...
    http://www.informatics.indiana.edu/schnell/papers/pbmb86_77.pdf

  • Modeling and simulation of biological systems with stochasticity...
    http://www.bioinfo.de/isb/2004/04/0024/main.html

  • ...
    http://icsb2003.molecool.wustl.edu/poster_presenters.html

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